Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank

Vox Sang. 2018 Jul 18:10.1111/vox.12695. doi: 10.1111/vox.12695. Online ahead of print.

Abstract

Background and objectives: Platelet concentrates are frequently transfused to patients with reduced immunity. An exhaustive description of their viral content is needed to prevent unwanted infection.

Material and methods: To track viral sequences, a shotgun metagenomics approach was used on a bank of 300 platelets concentrates. Sequences were analysed through the diagnostics-oriented pipeline ezVIR.

Results: We only observed viruses commonly described in healthy individuals.

Conclusion: Herein is reported the first viral landscape of a platelet concentrates bank.

Keywords: next-generation sequencing; platelet concentrates; transfusion-transmissible infections.

Associated data

  • GENBANK/KP257584.1
  • GENBANK/NC 002076.2
  • GENBANK/AB290919.1
  • GENBANK/HM011561.1
  • GENBANK/U31778.1
  • GENBANK/EU375803.1
  • GENBANK/KJ123690.1
  • GENBANK/NC 000883.2
  • GENBANK/EF422221.1
  • GENBANK/D90600.1
  • GENBANK/AF081782.1
  • GENBANK/K02121.1
  • GENBANK/X05015.1