Spatially Resolved Peptide-DNA Nanoassemblages for Biomarker Detection: A Synergy of DNA-Directed Immobilization and Nanografting

Methods Mol Biol. 2018:1811:151-162. doi: 10.1007/978-1-4939-8582-1_10.

Abstract

Peptide microarrays are becoming a promising alternative to protein microarrays due to the challenges associated with protein immobilization and purification. Here, we put forward a novel experimental-based approach that combines DNA-directed immobilization, nanografting, and atomic force height measurements to immobilize computationally designed cyclic peptide on an ultra-flat gold substrate. This procedure yields peptide-DNA nanoarrays, which can bind to the solvent-exposed site on the Beta-2-microglobulin (β2m).

Keywords: Atomic force microscope (AFM); Beta-2-microglobulin (β2m); Cyclic peptide; DNA-directed immobilization (DDI); Nanografting.

MeSH terms

  • Biosensing Techniques / methods
  • Gold / chemistry*
  • Humans
  • Immobilized Nucleic Acids / chemistry*
  • Microscopy, Atomic Force
  • Nanotechnology
  • Oligonucleotide Array Sequence Analysis
  • Peptides, Cyclic / chemistry*
  • beta 2-Microglobulin / analysis*

Substances

  • B2M protein, human
  • Immobilized Nucleic Acids
  • Peptides, Cyclic
  • beta 2-Microglobulin
  • Gold