Characterization of an atypical, thermostable, organic solvent- and acid-tolerant 2'-deoxyribosyltransferase from Chroococcidiopsis thermalis

Appl Microbiol Biotechnol. 2018 Aug;102(16):6947-6957. doi: 10.1007/s00253-018-9134-y. Epub 2018 Jun 5.

Abstract

In our search for thermophilic and acid-tolerant nucleoside 2'-deoxyribosyltransferases (NDTs), we found a good candidate in an enzyme encoded by Chroococcidiopsis thermalis PCC 7203 (CtNDT). Biophysical and biochemical characterization revealed CtNDT as a homotetramer endowed with good activity and stability at both high temperatures (50-100 °C) and a wide range of pH values (from 3 to 7). CtNDT recognizes purine bases and their corresponding 2'-deoxynucleosides but is also proficient using cytosine and 2'-deoxycytidine as substrates. These unusual features preclude the strict classification of CtNDT as either a type I or a type II NDT and further suggest that this simple subdivision may need to be updated in the future. Our findings also hint at a possible link between oligomeric state and NDT's substrate specificity. Interestingly from a practical perspective, CtNDT displays high activity (80-100%) in the presence of several water-miscible co-solvents in a proportion of up to 20% and was successfully employed in the enzymatic production of several therapeutic nucleosides such as didanosine, vidarabine, and cytarabine.

Keywords: Enzymatic synthesis; Extremophiles; Homology modeling; Nucleoside 2′-deoxyribosyltransferase; Nucleoside analogues.

MeSH terms

  • Cyanobacteria / enzymology*
  • Enzyme Stability
  • Enzymes, Immobilized / metabolism
  • Hot Temperature
  • Pentosyltransferases* / biosynthesis
  • Pentosyltransferases* / chemistry
  • Pentosyltransferases* / genetics
  • Pentosyltransferases* / isolation & purification
  • Solvents / chemistry
  • Substrate Specificity

Substances

  • Enzymes, Immobilized
  • Solvents
  • Pentosyltransferases
  • nucleoside deoxyribosyltransferase