Proteomic analysis of Tn-bearing glycoproteins from different stages of melanoma cells reveals new biomarkers

Biochimie. 2018 Aug:151:14-26. doi: 10.1016/j.biochi.2018.05.010. Epub 2018 May 24.

Abstract

Cutaneous melanoma, the most aggressive form of skin cancer, responds poorly to conventional therapy. The appearance of Tn antigen-modified proteins in cancer is correlated with metastasis and poor prognoses. The Tn determinant has been recognized as a powerful diagnostic and therapeutic target, and as an object for the development of anti-tumor vaccine strategies. This study was designed to identify Tn-carrying proteins and reveal their influence on cutaneous melanoma progression. We used a lectin-based strategy to purify Tn antigen-enriched cellular glycoproteome, the LC-MS/MS method to identify isolated glycoproteins, and the DAVID bioinformatics tool to classify the identified proteins. We identified 146 different Tn-bearing glycoproteins, 88% of which are new. The Tn-glycoproteome was generally enriched in proteins involved in the control of ribosome biogenesis, CDR-mediated mRNA stabilization, cell-cell adhesion and extracellular vesicle formation. The differential expression patterns of Tn-modified proteins for cutaneous primary and metastatic melanoma cells supported nonmetastatic and metastatic cell phenotypes, respectively. To our knowledge, this study is the first large-scale proteomic analysis of Tn-bearing proteins in human melanoma cells. The identified Tn-modified proteins are related to the biological and molecular nature of cutaneous melanoma and may be valuable biomarkers and therapeutic targets.

Keywords: Cancer glycan; Extracellular vesicles; Glycoproteome; Melanoma; Proteome; Vicia villosa agglutinin.

MeSH terms

  • Antigens, Tumor-Associated, Carbohydrate / metabolism*
  • Biomarkers, Tumor / metabolism*
  • Cell Line, Tumor
  • Chromatography, Liquid
  • Glycoproteins / metabolism*
  • Humans
  • Melanoma / metabolism*
  • Melanoma / pathology
  • Neoplasm Metastasis
  • Proteomics*
  • Skin Neoplasms / metabolism*
  • Skin Neoplasms / pathology
  • Tandem Mass Spectrometry

Substances

  • Antigens, Tumor-Associated, Carbohydrate
  • Biomarkers, Tumor
  • Glycoproteins
  • Tn antigen