Resolution Mechanism and Characterization of an Ammonium Chloride-Tolerant, High-Thermostable, and Salt-Tolerant Phenylalanine Dehydrogenase from Bacillus halodurans

Appl Biochem Biotechnol. 2018 Nov;186(3):789-804. doi: 10.1007/s12010-018-2767-6. Epub 2018 May 9.

Abstract

As phenylalanine dehydrogenase (PheDH) plays an important role in the synthesis of chiral drug intermediates and detection of phenylketonuria, it is significant to obtain a PheDH with specific and high activity. Here, a PheDH gene, pdh, encoding a novel BhPheDH with 61.0% similarity to the known PheDH from Microbacterium sp., was obtained. The BhPheDH showed optimal activity at 60 °C and pH 7.0, and it showed better stability in hot environment (40-70 °C) than the PheDH from Nocardia sp. And its activity and thermostability could be significantly increased by sodium salt. After incubation for 2 h in 3 M NaCl at 60 °C, the residual activity of the BhPheDH was found to be 1.8-fold higher than that of the control group (without NaCl). The BhPheDH could tolerate high concentration of ammonium chloride and its activity could be also enhanced by the high concentration of ammonium salts. These characteristics indicate that the BhPheDH possesses better thermostability, ammonium chloride tolerance, halophilic mechanism, and high salt activation. The mechanism of thermostability and high salt tolerance of the BhPheDH was analyzed by molecular dynamics simulation. These results provide useful information about the enzyme with high-temperature activity, thermostability, halophilic mechanism, tolerance to high concentration of ammonium chloride, higher salt activation and enantio-selectivity, and the application of molecular dynamics simulation in analyzing the mechanism of these distinctive characteristics.

Keywords: Chiral drug intermediates; Mechanism of salt tolerance; Molecular dynamics simulation; Phenylalanine dehydrogenase; Thermostability.

MeSH terms

  • Amino Acid Oxidoreductases / chemistry*
  • Ammonium Chloride / chemistry*
  • Bacillus / enzymology*
  • Bacterial Proteins / chemistry*
  • Enzyme Stability

Substances

  • Bacterial Proteins
  • Ammonium Chloride
  • Amino Acid Oxidoreductases
  • phenylalanine oxidase