Development of mRNA-based body fluid identification using reverse transcription loop-mediated isothermal amplification

Anal Bioanal Chem. 2018 Jul;410(18):4371-4378. doi: 10.1007/s00216-018-1088-5. Epub 2018 Apr 25.

Abstract

Identifying body fluids from forensic samples can provide valuable evidence for criminal investigations. Messenger RNA (mRNA)-based body fluid identification was recently developed, and highly sensitive parallel identification using reverse transcription polymerase chain reaction (RT-PCR) has been described. In this study, we developed reverse transcription loop-mediated isothermal amplification (RT-LAMP) as a simple, rapid assay for identifying three common forensic body fluids, namely blood, semen, and saliva, and evaluated its specificity and sensitivity. Hemoglobin beta (HBB), transglutaminase 4 (TGM4), and statherin (STATH) were selected as marker genes for blood, semen, and saliva, respectively. RT-LAMP could be performed in a single step including both reverse transcription and DNA amplification under an isothermal condition within 60 min, and detection could be conveniently performed via visual fluorescence. Marker-specific amplification was performed in each assay, and no cross-reaction was observed among five representative forensically relevant body fluids. The detection limits of the assays were 0.3 nL, 30 nL, and 0.3 μL for blood, semen, and saliva, respectively, and their sensitivities were comparable with those of RT-PCR. Furthermore, RT-LAMP assays were applicable to forensic casework samples. It is considered that RT-LAMP is useful for body fluid identification.

Keywords: Body fluid identification; Hemoglobin beta; RT-LAMP; Statherin; Transglutaminase 4; mRNA.

MeSH terms

  • Blood
  • Body Fluids / chemistry*
  • DNA / genetics
  • Forensic Genetics / methods*
  • Genetic Markers*
  • Hemoglobin Subunits / genetics
  • Humans
  • Kinetics
  • Limit of Detection
  • Male
  • Nucleic Acid Amplification Techniques*
  • RNA, Messenger / genetics*
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Saliva / chemistry
  • Salivary Proteins and Peptides / genetics
  • Spectrometry, Fluorescence
  • Spermatozoa / chemistry
  • Transglutaminases / genetics

Substances

  • Genetic Markers
  • Hemoglobin Subunits
  • RNA, Messenger
  • STATH protein, human
  • Salivary Proteins and Peptides
  • DNA
  • transglutaminase 4
  • Transglutaminases