Ehrlichia chaffeensis TRP120 nucleomodulin binds DNA with disordered tandem repeat domain

PLoS One. 2018 Apr 11;13(4):e0194891. doi: 10.1371/journal.pone.0194891. eCollection 2018.

Abstract

Ehrlichia chaffeensis, the causative agent of human monocytotropic ehrlichiosis, secretes several effector proteins that bind host DNA to modulate host gene expression. The tandem repeat protein 120 (TRP120), one of the largest effector proteins, has four nearly identical tandem repeat (TR) regions that each consists of 80 amino acids. In addition to playing a role in ehrlichial binding and internalization, TRP120 translocates to the host nucleus where it is thought to function as a transcription factor that modulates gene expression. However, sequence analysis of TRP120 does not identify the presence of DNA-binding or trans-activation domains typical of classical eukaryotic transcription factors. Thus, the mechanism by which TRP120 binds DNA and modulates gene expression remains elusive. Herein, we expressed the TR regions of the TRP120 protein, and characterized its solution structure and ability to bind DNA. TRP120, expressed as either a one or two TR repeat, is a monomer in solution, and is mostly disordered as determined by circular dichroism (CD) and nuclear magnetic resonance (NMR) spectroscopy. Using NMR spectroscopy, we further show that the 1 TR construct selectively binds GC-rich DNA. Although low pH was required for TRP120 TR-DNA interaction, acidic pH alone does not induce any significant structural changes in the TR region. This suggests that TRP120 folds into an ordered structure upon forming a protein-DNA complex, and thus folding of TRP120 TR is coupled with DNA binding.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Active Transport, Cell Nucleus
  • Antibodies, Bacterial / blood
  • Bacterial Proteins / physiology*
  • Cell Nucleus / metabolism
  • Circular Dichroism
  • DNA / metabolism
  • DNA-Binding Proteins / physiology*
  • Ehrlichia chaffeensis / genetics*
  • Ehrlichiosis / microbiology*
  • Host-Pathogen Interactions
  • Humans
  • Hydrogen-Ion Concentration
  • Magnetic Resonance Spectroscopy
  • Microbial Viability
  • Protein Domains
  • Protein Folding
  • Tandem Repeat Sequences*
  • Trans-Activators / metabolism
  • Transcriptional Activation
  • Ultraviolet Rays

Substances

  • Antibodies, Bacterial
  • Bacterial Proteins
  • DNA-Binding Proteins
  • Trans-Activators
  • DNA