A general strategy for synthesis of cyclophane-braced peptide macrocycles via palladium-catalysed intramolecular sp3 C-H arylation

Nat Chem. 2018 May;10(5):540-548. doi: 10.1038/s41557-018-0006-y. Epub 2018 Apr 2.

Abstract

New methods capable of effecting cyclization, and forming novel three-dimensional structures while maintaining favourable physicochemical properties are needed to facilitate the development of cyclic peptide-based drugs that can engage challenging biological targets, such as protein-protein interactions. Here, we report a highly efficient and generally applicable strategy for constructing new types of peptide macrocycles using palladium-catalysed intramolecular C(sp3)-H arylation reactions. Easily accessible linear peptide precursors of simple and versatile design can be selectively cyclized at the side chains of either aromatic or modified non-aromatic amino acid units to form various cyclophane-braced peptide cycles. This strategy provides a powerful tool to address the long-standing challenge of size- and composition-dependence in peptide macrocyclization, and generates novel peptide macrocycles with uniquely buttressed backbones and distinct loop-type three-dimensional structures. Preliminary cell proliferation screening of the pilot library revealed a potent lead compound with selective cytotoxicity toward proliferative Myc-dependent cancer cell lines.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carbon / chemistry*
  • Catalysis
  • Cell Line, Tumor
  • Cyclization
  • Density Functional Theory
  • Ethers, Cyclic / chemistry*
  • Humans
  • Hydrogen / chemistry*
  • Macrocyclic Compounds / chemistry*
  • Palladium / chemistry*
  • Peptides / chemistry*

Substances

  • Ethers, Cyclic
  • Macrocyclic Compounds
  • Peptides
  • Palladium
  • Carbon
  • Hydrogen