Endophytic bacterial microbiome associated with leaves of genetically modified (AtAREB1) and conventional (BR 16) soybean plants

World J Microbiol Biotechnol. 2018 Mar 29;34(4):56. doi: 10.1007/s11274-018-2439-2.

Abstract

Plant leaves (phyllosphere) have a great potential for colonization and microbial growth, consisting of a dynamic environment in which several factors can interfere with the microbial population structure. The use of genetically modified (GM) plants has introduced several traits in agriculture, such as the improvement of plant drought tolerance, as observed in the AtAREB1 transcription factor overexpression in soybean (Glycine max L. Merrill). The present study aimed at investigating the taxonomic and functional profile of the leaf microbial community of bacteria found in GM (drought-tolerant event 1Ea2939) and conventional (BR 16) soybean plants. Bacterial DNA was extracted from leaf samples collected from each genotype and used for microbial diversity and richness analysis through the MiSeq Illumina platform. Functional prediction was performed using the PICRUSt tool and the STAMP v 2.1.3 software. The obtainment of the GM event 1Ea2939 showed minimum effects on the microbial community and in the potential for chemical-genetic communication, i.e. in the potential for symbiotic and/or mutualistic interaction between plants and their natural microbiota.

Keywords: Drought tolerance; Glycine max L. Merrill; MiSeq Illumina; Microbiome; Phyllosphere.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis Proteins / genetics*
  • Bacteria / classification*
  • Bacteria / genetics
  • Bacteria / isolation & purification
  • Basic-Leucine Zipper Transcription Factors / genetics*
  • Biodiversity
  • DNA, Bacterial / genetics
  • Droughts
  • Endophytes / classification*
  • Endophytes / genetics
  • Endophytes / isolation & purification
  • Fabaceae / genetics
  • Fabaceae / microbiology
  • Glycine max / genetics*
  • Glycine max / microbiology*
  • Microbiota* / genetics
  • Phylogeny
  • Plant Leaves / microbiology*
  • Plants, Genetically Modified / genetics*
  • RNA, Ribosomal, 16S / genetics
  • Soil Microbiology

Substances

  • AREB1 protein, Arabidopsis
  • Arabidopsis Proteins
  • Basic-Leucine Zipper Transcription Factors
  • DNA, Bacterial
  • RNA, Ribosomal, 16S