Quantum Calculations on Plant Cell Wall Component Interactions

Interdiscip Sci. 2019 Sep;11(3):485-495. doi: 10.1007/s12539-018-0293-4. Epub 2018 Mar 26.

Abstract

Density functional theory calculations were performed to assess the relative interaction energies of plant cell wall components: cellulose, xylan, lignin and pectin. Monomeric and tetramer linear molecules were allowed to interact in four different configurations for each pair of compounds. The M05-2X exchange-correlation functional which implicitly accounts for short- and mid-range dispersion was compared against MP2 and RI-MP2 to assess the reliability of the former for modeling van der Waals forces between these PCW components. Solvation effects were examined by modeling the interactions in the gas phase, in explicit H2O, and in polarized continuum models (PCM) of solvation. PCMs were used to represent water, methanol, and chloroform. The results predict the relative ranges of each type of interaction and when specific configurations will be strongly preferred. Structures and energies are useful as a basis for testing classical force fields and as guidance for coarse-grained models of PCWs.

Keywords: Cellulose; Interaction energies; Lignin; Pectin; Quantum chemistry; Xylan.

MeSH terms

  • Cell Wall / chemistry*
  • Cellulose / chemistry
  • Chloroform / chemistry
  • Glucose / chemistry
  • Hydrogen Bonding
  • Lignin / chemistry*
  • Methanol / chemistry
  • Pectins / chemistry*
  • Plants / chemistry*
  • Polysaccharides / chemistry
  • Quantum Theory
  • Reproducibility of Results
  • Solvents / chemistry
  • Thermodynamics
  • Water / chemistry
  • Xylans / chemistry*

Substances

  • Polysaccharides
  • Solvents
  • Xylans
  • Water
  • Chloroform
  • hemicellulose
  • Pectins
  • Cellulose
  • Lignin
  • Glucose
  • Methanol