The Species Problem in Virology

Adv Virus Res. 2018:100:1-18. doi: 10.1016/bs.aivir.2017.10.008. Epub 2017 Nov 2.

Abstract

Virus classification deals with conceptual species classes that have viruses as their members. A virus species cannot be described but can only be defined by listing certain species-defining properties of its member. However, it is not possible to define a virus species by using a single species-defining property. The new 2013 official definition of virus species is not appropriate because it applies equally to virus genera. A nucleotide motif is a chemical part of a viral genome and is not a species-defining property that could be used for establishing new virus species. A virus classification based solely on nucleotide sequences is a classification of viral genomes and not of viruses. The variable distribution of species-defining properties of a polythetic species class is not itself a single common property of all the members of the class, since this would lead to the paradox that every polythetic class is also a monothetic one.

Keywords: Linnaean classification hierarchy; Non-Latinized binomial species names; Polythetic class; Viral taxonomy; Virus identification; Virus species.

MeSH terms

  • Classification
  • Genome, Viral / genetics
  • Species Specificity
  • Virology*
  • Viruses / chemistry
  • Viruses / classification*
  • Viruses / genetics