Genomic characterization of grapevine virus J, a novel virus identified in grapevine

Arch Virol. 2018 Jul;163(7):1965-1967. doi: 10.1007/s00705-018-3793-y. Epub 2018 Mar 7.

Abstract

This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine (Vitis vinifera) cultivar 'Kizil Sapak' by high-throughput sequencing (HTS) and tentatively named "grapevine virus J" (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae; family Betaflexiviridae), with the closest characterized virus being grapevine virus D (GVD).

MeSH terms

  • Base Sequence
  • Flexiviridae / classification
  • Flexiviridae / genetics*
  • Flexiviridae / isolation & purification
  • Genome, Viral*
  • Genomics
  • High-Throughput Nucleotide Sequencing
  • Open Reading Frames
  • Phylogeny
  • Plant Diseases / virology
  • Viral Proteins / genetics
  • Vitis / virology*

Substances

  • Viral Proteins