Crystal structure of 8-(4-methyl-phen-yl)-2'-de-oxy-adenosine hemihydrate

Acta Crystallogr E Crystallogr Commun. 2018 Jan 1;74(Pt 1):1-5. doi: 10.1107/S2056989017017212.

Abstract

In the asymmetric unit, equalling the unit cell (triclinic, P1, Z = 1), two mol-ecules of the title compound, 8-(4-methyl-phen-yl)-d-2'-de-oxy-adenosine, C17H19N5O3, are present, with distinct conformations of the two sugar moieties, together with one solvent water mol-ecule. All three ribose O atoms are involved in hydrogen bonding and the crystal packing is largely determined by hydrogen-bonding or hydrogen-heteroatom inter-actions (O-H⋯O, O-H⋯N, N-H⋯O, C-H⋯O and C-H⋯N) with one independent mol-ecule directly linked to four neighbouring mol-ecules and the other mol-ecule directly linked to six neighbouring mol-ecules. The two independent mol-ecules of the asymmetric unit display three weak intra-molecular C-H-to-heteroatom contacts, two of which are very similar despite the different conformations of the deoxyribosyl moieties. The aromatic ring systems of both mol-ecules are in proximity to each other and somehow aligned, though not coplanar. The absolute structures of the two mol-ecules were assumed with reference to the reactant 8-bromo-d-2'-de-oxy-adenosine as they could not be determined crystallographically.

Keywords: Suzuki–Miyaura cross-coupling; adenosine; catalysis; crystal structure; nucleoside; palladium.

Grants and funding

This work was funded by Alexander von Humboldt-Stiftung grant 3.4 - IP - DEU/1131213 to Anant R. Kapdi and Carola Schulzke. FP7 Ideas: European Research Council grant 281257 to Carola Schulzke.