Phosphoproteomic analysis reveals Smad protein family activation following Rift Valley fever virus infection

PLoS One. 2018 Feb 6;13(2):e0191983. doi: 10.1371/journal.pone.0191983. eCollection 2018.

Abstract

Rift Valley fever virus (RVFV) infects both ruminants and humans leading to a wide variance of pathologies dependent on host background and age. Utilizing a targeted reverse phase protein array (RPPA) to define changes in signaling cascades after in vitro infection of human cells with virulent and attenuated RVFV strains, we observed high phosphorylation of Smad transcription factors. This evolutionarily conserved family is phosphorylated by and transduces the activation of TGF-β superfamily receptors. Moreover, we observed that phosphorylation of Smad proteins required active RVFV replication and loss of NSs impaired this activation, further corroborating the RPPA results. Gene promoter analysis of transcripts altered after RVFV infection identified 913 genes that contained a Smad-response element. Functional annotation of these potential Smad-regulated genes clustered in axonal guidance, hepatic fibrosis and cell signaling pathways involved in cellular adhesion/migration, calcium influx, and cytoskeletal reorganization. Furthermore, chromatin immunoprecipitation confirmed the presence of a Smad complex on the interleukin 1 receptor type 2 (IL1R2) promoter, which acts as a decoy receptor for IL-1 activation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cells, Cultured
  • Humans
  • Phosphoproteins / metabolism*
  • Phosphorylation
  • Promoter Regions, Genetic
  • Proteomics*
  • RNA, Small Interfering / genetics
  • Rift Valley Fever / metabolism*
  • Rift Valley fever virus / genetics
  • Rift Valley fever virus / physiology
  • Smad Proteins / genetics
  • Smad Proteins / metabolism*
  • Virus Replication / genetics

Substances

  • Phosphoproteins
  • RNA, Small Interfering
  • Smad Proteins

Grants and funding

This work was funded through a Defense Threat Reduction Agency (DTRA) grant HDTRA1-13-1-0006 to KK and AN. DTRA does not have any role in the design of the study and collection, analysis, and interpretation of data and nor in writing the manuscript. DCE Consulting provided bioinformatics analysis for this study as a subcontract award as part of DTRA grant HDTRA1-13-1-0006. The specific roles of these authors are articulated in the ‘author contributions’ section.