Nucleophile Promiscuity of Engineered Class II Pyruvate Aldolase YfaU from E. Coli

Angew Chem Int Ed Engl. 2018 Mar 26;57(14):3583-3587. doi: 10.1002/anie.201711289. Epub 2018 Feb 14.

Abstract

Pyruvate-dependent aldolases exhibit a stringent selectivity for pyruvate, limiting application of their synthetic potential, which is a drawback shared with other existing aldolases. Structure-guided rational protein engineering rendered a 2-keto-3-deoxy-l-rhamnonate aldolase variant, fused with a maltose-binding protein (MBP-YfaU W23V/L216A), capable of efficiently converting larger pyruvate analogues, for example, those with linear and branched aliphatic chains, in aldol addition reactions. Combination of these nucleophiles with N-Cbz-alaninal (Cbz=benzyloxycarbonyl) and N-Cbz-prolinal electrophiles gave access to chiral building blocks, for example, derivatives of (2S,3S,4R)-4-amino-3-hydroxy-2-methylpentanoic acid (68 %, d.r. 90:10) and the enantiomer of dolaproine (33 %, d.r. 94:6) as well as a collection of unprecedented α-amino acid derivatives of the proline and pyrrolizidine type. Conversions varied between 6-93 % and diastereomeric ratios from 50:50 to 95:5 depending on the nucleophilic and electrophilic components.

Keywords: aldol reactions; amino acids; biocatalysis; pyruvate aldolases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldehyde-Lyases / chemistry*
  • Aldehydes / chemistry
  • Amino Acids / chemistry
  • Escherichia coli / enzymology*
  • Heterocyclic Compounds, 2-Ring / chemistry
  • Models, Molecular
  • Molecular Structure
  • Proline / analogs & derivatives
  • Proline / chemistry
  • Protein Binding
  • Pyrrolidines / chemistry
  • Pyruvic Acid / chemistry*
  • Stereoisomerism
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Aldehydes
  • Amino Acids
  • Heterocyclic Compounds, 2-Ring
  • Pyrrolidines
  • dolaproine
  • Pyruvic Acid
  • 3-hydroxybutanal
  • Proline
  • Aldehyde-Lyases