In silico identification and experimental validation of amino acid motifs required for the Rho-of-plants GTPase-mediated activation of receptor-like cytoplasmic kinases

Plant Cell Rep. 2018 Apr;37(4):627-639. doi: 10.1007/s00299-018-2256-y. Epub 2018 Jan 16.

Abstract

Several amino acid motifs required for Rop-dependent activity were found to form a common surface on RLCKVI_A kinases. This indicates a unique mechanism for Rho-type GTPase-mediated kinase activation in plants. Rho-of-plants (Rop) G-proteins are implicated in the regulation of various cellular processes, including cell growth, cell polarity, hormonal and pathogen responses. Our knowledge about the signalling pathways downstream of Rops is continuously increasing. However, there are still substantial gaps in this knowledge. One reason for this is that these pathways are considerably different from those described for yeast and/or animal Rho-type GTPases. Among others, plants lack all Rho/Rac/Cdc42-activated kinase families. Only a small group of plant-specific receptor-like cytoplasmic kinases (RLCK VI_A) has been shown to exhibit Rop-binding-dependent in vitro activity. These kinases do not carry any known GTPase-binding motifs. Based on the sequence comparison of the Rop-activated RLCK VI_A and the closely related but constitutively active RLCK VI_B kinases, several distinguishing amino acid residues/motifs were identified. All but one of these were found to be required for the Rop-mediated regulation of the in vitro activity of two RLCK VI_A kinases. Structural modelling indicated that these motifs might form a common Rop-binding surface. Based on in silico data mining, kinases that have the identified Rop-binding motifs are present in Embryophyta but not in unicellular green algae. It can, therefore, be supposed that Rops recruited these plant-specific kinases for signalling at an early stage of land plant evolution.

Keywords: Arabidopsis thaliana; Cellular signalling, kinase activity; Protein–protein interaction; RLCK; Rop GTPase.

MeSH terms

  • Algal Proteins / genetics*
  • Algal Proteins / metabolism
  • Amino Acid Motifs / genetics*
  • Amino Acid Sequence
  • Chlamydomonas reinhardtii / genetics
  • Chlamydomonas reinhardtii / metabolism
  • Computer Simulation
  • GTP-Binding Proteins / genetics*
  • GTP-Binding Proteins / metabolism
  • Models, Molecular
  • Phosphorylation
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Protein Binding
  • Protein Domains
  • Protein Kinases / chemistry
  • Protein Kinases / genetics*
  • Protein Kinases / metabolism
  • Sequence Homology, Amino Acid
  • Two-Hybrid System Techniques

Substances

  • Algal Proteins
  • Plant Proteins
  • Protein Kinases
  • GTP-Binding Proteins