Development of cyclic AMP receptor protein-based artificial transcription factor for intensifying gene expression

Appl Microbiol Biotechnol. 2018 Feb;102(4):1673-1685. doi: 10.1007/s00253-018-8750-x. Epub 2018 Jan 16.

Abstract

Vector-dependent gene overexpression typically relies on an efficient operon and sufficient RNA polymerases (RNAPs). The lac (lactose) operon is a paradigm of transcription control, and cyclic AMP receptor protein (CRP) is a global regulator capable of recruiting RNAPs. However, the gap between lac operon and CRP has not been well bridged. In this work, CRP was fused to lac repressor protein (lacI) to form an artificial transcription factor (ATF) with the expectation that when LacI acted on the lacO-positioned upstream of gene of interest, the LacI-tethered CRP would trap RNAPs and thus improve the expression of PuuC, an aldehyde dehydrogenase catalyzing 3-hydroxypropionaldehyde (3-HPA) to 3-hydroxypropionic acid (3-HP) in Klebsiella pneumoniae. As expected, SDS-PAGE and HPLC showed enhanced PuuC expression and 3-HP production, respectively, compared to the control strain without expressing chimeric protein LacI-CRP. Moreover, quantitative real-time PCR demonstrated increased transcription levels of both PuuC and RNAP coding genes. In shake-flask cultivation, the recombinant K. pneumoniae strain coexpressing LacI-CRP and PuuC produced 1.67-fold of 3-HP relative to the stain only overexpressing PuuC. In bioreactor cultivation, the strain coexpressing LacI-CRP and PuuC produced 35.1 g/L 3-HP, whereas the strain without expressing LacI-CRP generated only 9.8 g/L 3-HP. Overall, these results indicated that as an ATF, LacI-CRP significantly boosted PuuC expression and 3-HP production. We envision that LacI-CRP as a plug-and-play part can be used for regulating gene expression.

Keywords: 3-Hydroxypropionic acid; Cyclic AMP receptor protein; Klebsiella pneumoniae; RNA polymerase; lac operon.

MeSH terms

  • Aldehyde Dehydrogenase / biosynthesis
  • Chromatography, High Pressure Liquid
  • Cyclic AMP Receptor Protein / genetics
  • Cyclic AMP Receptor Protein / metabolism*
  • DNA-Directed RNA Polymerases / metabolism
  • Electrophoresis, Polyacrylamide Gel
  • Gene Expression*
  • Glyceraldehyde / analogs & derivatives
  • Glyceraldehyde / metabolism
  • Klebsiella pneumoniae / genetics
  • Klebsiella pneumoniae / metabolism
  • Lac Repressors / genetics
  • Lac Repressors / metabolism*
  • Lactic Acid / analogs & derivatives
  • Lactic Acid / metabolism
  • Operator Regions, Genetic
  • Propane / metabolism
  • Protein Binding
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*

Substances

  • Cyclic AMP Receptor Protein
  • Lac Repressors
  • Recombinant Fusion Proteins
  • Transcription Factors
  • 3-hydroxypropionaldehyde
  • Lactic Acid
  • Glyceraldehyde
  • hydracrylic acid
  • Aldehyde Dehydrogenase
  • DNA-Directed RNA Polymerases
  • Propane