High-Resolution Cryoelectron Microscopy Structure of the Cyclic Nucleotide-Modulated Potassium Channel MloK1 in a Lipid Bilayer

Structure. 2018 Jan 2;26(1):20-27.e3. doi: 10.1016/j.str.2017.11.012. Epub 2017 Dec 14.

Abstract

Eukaryotic cyclic nucleotide-modulated channels perform their diverse physiological roles by opening and closing their pores to ions in response to cyclic nucleotide binding. We here present a structural model for the cyclic nucleotide-modulated potassium channel homolog from Mesorhizobium loti, MloK1, determined from 2D crystals in the presence of lipids. Even though crystals diffract electrons to only ∼10 Å, using cryoelectron microscopy (cryo-EM) and recently developed computational methods, we have determined a 3D map of full-length MloK1 in the presence of cyclic AMP (cAMP) at ∼4.5 Å isotropic 3D resolution. The structure provides a clear picture of the arrangement of the cyclic nucleotide-binding domains with respect to both the pore and the putative voltage sensor domains when cAMP is bound, and reveals a potential gating mechanism in the context of the lipid-embedded channel.

Keywords: 2D crystals; CNBD; MloK1; MlotiK1; cryoelectron microscopy; cytoplasmic domains; electron crystallography; membrane protein; potassium channel; voltage sensor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Caenorhabditis elegans Proteins / chemistry
  • Caenorhabditis elegans Proteins / genetics
  • Caenorhabditis elegans Proteins / metabolism
  • Cloning, Molecular
  • Cryoelectron Microscopy / methods
  • Cyclic AMP / chemistry*
  • Cyclic AMP / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels / chemistry
  • Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels / genetics
  • Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels / metabolism
  • Image Processing, Computer-Assisted / methods
  • Ion Channel Gating
  • Ion Channels / chemistry
  • Ion Channels / genetics
  • Ion Channels / metabolism
  • Lipid Bilayers / chemistry*
  • Lipid Bilayers / metabolism
  • Mesorhizobium / chemistry*
  • Mesorhizobium / metabolism
  • Models, Molecular
  • Potassium / chemistry*
  • Potassium / metabolism
  • Potassium Channels / chemistry
  • Potassium Channels / genetics
  • Potassium Channels / metabolism
  • Potassium Channels, Voltage-Gated / chemistry*
  • Potassium Channels, Voltage-Gated / genetics
  • Potassium Channels, Voltage-Gated / metabolism
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Structural Homology, Protein
  • Thermodynamics

Substances

  • Bacterial Proteins
  • Caenorhabditis elegans Proteins
  • HCN1 protein, human
  • Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels
  • Ion Channels
  • Lipid Bilayers
  • Potassium Channels
  • Potassium Channels, Voltage-Gated
  • Recombinant Proteins
  • tax-4 protein, C elegans
  • Cyclic AMP
  • Potassium