The ribosomal DNA metaphase loop of Saccharomyces cerevisiae gets condensed upon heat stress in a Cdc14-independent TORC1-dependent manner

Cell Cycle. 2018;17(2):200-215. doi: 10.1080/15384101.2017.1407890. Epub 2018 Jan 21.

Abstract

Chromosome morphology in Saccharomyces cerevisiae is only visible at the microscopic level in the ribosomal DNA array (rDNA). The rDNA has been thus used as a model to characterize condensation and segregation of sister chromatids in mitosis. It has been established that the metaphase structure ("loop") depends, among others, on the condensin complex; whereas its segregation also depends on that complex, the Polo-like kinase Cdc5 and the cell cycle master phosphatase Cdc14. In addition, Cdc14 also drives rDNA hypercondensation in telophase. Remarkably, since all these components are essential for cell survival, their role on rDNA condensation and segregation was established by temperature-sensitive (ts) alleles. Here, we show that the heat stress (HS) used to inactivate ts alleles (25 ºC to 37 ºC shift) causes rDNA loop condensation in metaphase-arrested wild type cells, a result that can also be mimicked by other stresses that inhibit the TORC1 pathway. Because this condensation might challenge previous findings with ts alleles, we have repeated classical experiments of rDNA condensation and segregation, yet using instead auxin-driven degradation alleles (aid alleles). We have undertaken the protein degradation at lower temperatures (25 ºC) and concluded that the classical roles for condensin, Cdc5, Cdc14 and Cdc15 still prevailed. Thus, condensin degradation disrupts rDNA higher organization, Cdc14 and Cdc5 degradation precludes rDNA segregation and Cdc15 degradation still allows rDNA hypercompaction in telophase. Finally, we provide direct genetic evidence that this HS-mediated rDNA condensation is dependent on TORC1 but, unlike the one observed in anaphase, is independent of Cdc14.

Keywords: Cdc14; Cdc15; Cdc5; Cdc60; Heat stress; TORC1; aid degron; condensin; rapamycin; ribosomal DNA; temperature-sensitive allele.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphatases / metabolism
  • Anaphase
  • Cell Cycle Proteins / metabolism
  • DNA, Ribosomal / chemistry*
  • DNA-Binding Proteins / metabolism
  • GTP-Binding Proteins / metabolism
  • Hot Temperature*
  • Indoleacetic Acids
  • Metaphase / genetics
  • Multiprotein Complexes / metabolism
  • Protein Serine-Threonine Kinases / metabolism
  • Protein Tyrosine Phosphatases / metabolism
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / antagonists & inhibitors
  • Saccharomyces cerevisiae Proteins / metabolism
  • Saccharomyces cerevisiae Proteins / physiology*
  • Telophase
  • Transcription Factors / antagonists & inhibitors
  • Transcription Factors / physiology*

Substances

  • CDC14 protein, S cerevisiae
  • CDC15 protein
  • Cell Cycle Proteins
  • DNA, Ribosomal
  • DNA-Binding Proteins
  • Indoleacetic Acids
  • Multiprotein Complexes
  • Saccharomyces cerevisiae Proteins
  • TORC1 protein complex, S cerevisiae
  • Transcription Factors
  • condensin complexes
  • Protein Serine-Threonine Kinases
  • CDC5 protein, S cerevisiae
  • Protein Tyrosine Phosphatases
  • Adenosine Triphosphatases
  • GTP-Binding Proteins

Grants and funding

This work was supported by the Instituto de Salud Carlos III under Grant PI12/00280 and Spanish Ministry of Economy and Competitiveness (MINECO) under Grant BFU2015-63902-R. Both grants were co-financed with the European Commission's ERDF structural funds.