Comparative genomics of type 1 IncC plasmids from China

Future Microbiol. 2017 Dec:12:1511-1522. doi: 10.2217/fmb-2017-0072. Epub 2017 Nov 15.

Abstract

Aim: This study dealt with genomic characterization of type 1 IncC resistance plasmids, capable of spreading across taxonomic borders, from China.

Materials & methods: p112298-tetA was sequenced and compared with type 1 IncC reference plasmid pR148 and two available sequenced type 1 IncC plasmids pHS36-NDM and pVAS3-1 from China.

Results: These plasmids contained one or more exogenous resistance islands, which included the ARI-A islands, the ARI-B islands, the ISEcp1-blaCMY units and the bla KPC-2 region and were inserted at various sites in the IncC backbone and thus represented three distinct lineages.

Conclusion: Complex rearrangement and homologous recombination events have occurred during evolution of p112298-tetA, making it significantly differ modularly from the other three plasmids with respect to both plasmid backbone and exogenous resistance regions.

Keywords: Citrobacter freundii; multidrug resistance; p112298-tetA; type 1 IncC plasmid.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • China
  • DNA Transposable Elements
  • Drug Resistance, Bacterial
  • Evolution, Molecular
  • Gene Order*
  • Genes, Bacterial*
  • Genomic Islands
  • Genomics*
  • Plasmids / isolation & purification*
  • Recombination, Genetic
  • Sequence Analysis, DNA

Substances

  • DNA Transposable Elements