Protein Recognition by Functionalized Sulfonatocalix[4]arenes

Chemistry. 2018 Jan 19;24(4):984-991. doi: 10.1002/chem.201704931. Epub 2017 Dec 13.

Abstract

The interactions of two mono-functionalized sulfonatocalix[4]arenes with cytochrome c were investigated by structural and thermodynamic methods. The replacement of a single sulfonate with either a bromo or a phenyl substituent resulted in altered recognition of cytochrome c as evidenced by X-ray crystallography. The bromo-substituted ligand yielded a new binding mode in which a self-encapsulated calixarene dimer contributed to crystal packing. This ligand also formed a weak halogen bond with the protein. The phenyl-substituted ligand was bound to Lys4 of cytochrome c, in a 1.7 Å resolution crystal structure. A dimeric packing arrangement mediated by ligand-ligand contacts in the crystal suggested a possible assembly mechanism. The different protein recognition properties of these calixarenes are discussed.

Keywords: calixarene; halogen bond; molecular glue; self-assembly; structural biology.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Calixarenes / chemistry*
  • Calorimetry
  • Crystallography, X-Ray
  • Cytochromes c / chemistry*
  • Ligands
  • Magnetic Resonance Spectroscopy
  • Molecular Structure
  • Protein Binding
  • Structure-Activity Relationship
  • Thermodynamics

Substances

  • Ligands
  • Calixarenes
  • Cytochromes c