Rethinking ovarian cancer genomics: where genome-wide association studies stand?

Pharmacogenomics. 2017 Nov;18(17):1611-1625. doi: 10.2217/pgs-2017-0108. Epub 2017 Nov 2.

Abstract

Genome-wide association studies (GWAS) allow the finding of genetic variants associated with several traits. Regarding ovarian cancer (OC), 15 GWAS have been conducted since 2009, with the discovery of 49 SNPs associated with disease susceptibility and 46 with impact in the clinical outcome of patients (p < 5.00 × 10-2). Among them, 14 variants reached the genome-wide significance (p < 5.00 × 10-8). Despite the results obtained, they should be validated in independent sets. So far, five validation studies have been conducted which could confirm the association of 12 OC susceptibility SNPs. Consequently, post-GWAS studies are crucial unravel the biological plausibility of GWAS' findings and the allelic spectrum of OC.

Keywords: GWAS; ovarian cancer; polymorphisms; validation.

Publication types

  • Review

MeSH terms

  • Alleles
  • Female
  • Genetic Predisposition to Disease / genetics*
  • Genome-Wide Association Study / methods
  • Genomics / methods
  • Genotype
  • Humans
  • Ovarian Neoplasms / genetics*
  • Polymorphism, Single Nucleotide / genetics*