Stress2TF: a manually curated database of TF regulation in plant response to stress

Gene. 2018 Jan 5:638:36-40. doi: 10.1016/j.gene.2017.09.067. Epub 2017 Sep 30.

Abstract

Considerable studies demonstrate that plant transcription factors (TFs) play key regulatory roles in abiotic/biotic stress conditions, such as drought and pathogen attack. However, there is no effort dedicated to curate experimentally validated stress-TF regulatory relationships from these individual reports into a central database, which put an obstacle in the exploration of stress-TF regulations in plants. To address this issue, we presented a literature-curated database 'Stress2TF' that currently documented 1533 regulatory relationships between 71 abiotic/biotic stresses and 558 TFs in 47 plant species. Each entry in Stress2TF contains detailed information about a stress-TF relationship such as plant name, stress name, TF and brief description of stress-TF relationship. Stress2TF provided a user-friendly interface for entry browse, search and download. In addition, a submission page and several useful tools (e.g., BLAST, network visualization) were integrated. Stress2TF may be a valuable resource for the research of stress-TF regulatory mechanisms in plants. Stress2TF is available at http://csgenomics.ahau.edu.cn/Stress2TF.

Keywords: Database; Network; Plant transcription factor; Stress; Stress-TF regulation.

MeSH terms

  • Adaptation, Physiological
  • Arabidopsis / genetics*
  • Arabidopsis / physiology
  • Databases, Genetic*
  • Gene Expression Regulation, Plant
  • Oryza / genetics*
  • Oryza / physiology
  • Transcription Factors / physiology*

Substances

  • Transcription Factors