Standardization in synthetic biology: an engineering discipline coming of age

Crit Rev Biotechnol. 2018 Aug;38(5):647-656. doi: 10.1080/07388551.2017.1380600. Epub 2017 Sep 27.

Abstract

Background: Leaping DNA read-and-write technologies, and extensive automation and miniaturization are radically transforming the field of biological experimentation by providing the tools that enable the cost-effective high-throughput required to address the enormous complexity of biological systems. However, standardization of the synthetic biology workflow has not kept abreast with dwindling technical and resource constraints, leading, for example, to the collection of multi-level and multi-omics large data sets that end up disconnected or remain under- or even unexploited.

Purpose: In this contribution, we critically evaluate the various efforts, and the (limited) success thereof, in order to introduce standards for defining, designing, assembling, characterizing, and sharing synthetic biology parts. The causes for this success or the lack thereof, as well as possible solutions to overcome these, are discussed.

Conclusion: Akin to other engineering disciplines, extensive standardization will undoubtedly speed-up and reduce the cost of bioprocess development. In this respect, further implementation of synthetic biology standards will be crucial for the field in order to redeem its promise, i.e. to enable predictable forward engineering.

Keywords: Standardization; biological parts; data management; forward engineering; part characterization; synthetic biology.

Publication types

  • Review

MeSH terms

  • Bioengineering / standards*
  • Biomedical Research / standards
  • Biotechnology / standards
  • DNA
  • Escherichia coli
  • Reproducibility of Results
  • Synthetic Biology / standards*

Substances

  • DNA