Identification and characterization of a novel (-)-vibo-quercitol 1-dehydrogenase from Burkholderia terrae suitable for production of (-)-vibo-quercitol from 2-deoxy-scyllo-inosose

Appl Microbiol Biotechnol. 2017 Oct;101(20):7545-7555. doi: 10.1007/s00253-017-8483-2. Epub 2017 Sep 13.

Abstract

(-)-vibo-Quercitol is a deoxyinositol (1L-1,2,4/3,5-cyclohexanepentol) that naturally occurs in oak species, honeydew honey, wines aged in oak barrels, and Gymnema sylvestre and is a potential intermediate for pharmaceuticals. We found that (-)-vibo-quercitol is stereoselectively synthesized from 2-deoxy-scyllo-inosose by the reductive reaction of a novel (-)-vibo-quercitol 1-dehydrogenase found in the proteomes of Burkholderia, Pseudomonas, and Arthrobacter. Among them, Burkholderia terrae sp. AKC-020 (40-1) produced a (-)-vibo-quercitol 1-dehydrogenase appropriate for synthesizing (-)-vibo-quercitol with a high diastereomeric excess. The enzyme was strongly induced in Bu. terrae cells when quercitol or 2-deoxy-scyllo-inosose was used as carbon source in the culture medium. The enzyme is NAD(H)-dependent and shows highly specific activity for (-)-vibo-quercitol and myo-inositol among the substrates tested. The enzyme gene (qudh) was obtained by PCR using degenerate primers based on the N-terminal and internal amino acid sequences of the purified enzyme, followed by thermal asymmetric interlaced PCR. The qudh gene showed homology with inositol 2-dehydrogenase (sharing 49.5% amino acid identity with IdhA from Sinorhizobium meliloti 1021). We successfully produced several recombinant (-)-vibo-quercitol 1-dehydrogenases and related enzymes identified by genome database mining using an Escherichia coli expression system. This revealed that scyllo-inositol dehydrogenase (IolX) in Bacillus subtilis can catalyze the reduction of 2-deoxy-scyllo-inosose to yield scyllo-quercitol, a stereoisomer of (-)-vibo-quercitol. Thus, we successfully identified two enzymes to produce both stereoisomers of deoxyinositols that are rare in nature.

Keywords: (−)-vibo-Quercitol; (−)-vibo-Quercitol 1-dehydrogenase (2-deoxy-scyllo-inosose reductase); Burkholderia terrae; Enzymatic synthesis; scyllo-Inositol dehydrogenase (IolX); scyllo-Quercitol.

MeSH terms

  • Bacillus subtilis / enzymology
  • Bacillus subtilis / genetics
  • Burkholderiaceae / enzymology*
  • Burkholderiaceae / genetics
  • Cloning, Molecular
  • Coenzymes / metabolism
  • Culture Media / chemistry
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Gene Expression Regulation, Bacterial / drug effects
  • Inositol / analogs & derivatives*
  • Inositol / metabolism
  • NAD / metabolism
  • Oxidoreductases / chemistry
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism*
  • Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Substrate Specificity

Substances

  • Coenzymes
  • Culture Media
  • vibo-quercitol
  • NAD
  • Inositol
  • 2-deoxyinosose
  • Oxidoreductases