Prediction of radiosensitive patients with gastric cancer by developing gene signature

Int J Oncol. 2017 Oct;51(4):1067-1076. doi: 10.3892/ijo.2017.4107. Epub 2017 Aug 30.

Abstract

Adjuvant radiotherapy is an important clinical treatment for the majority of gastric cancer, a common cancer. However, radiotherapy is a double-edged sword. It is necessary to develop a method to predict radiosensitive patients who are most likely to benefit from radiotherapy. Using the publicly available data of gastric cancer from The Cancer Genome Atlas (TCGA), we developed a gene signature that predicts radiosensitive patients through estimating a new index, nominal HR (nHR) (HR product of sensitive genes), for each patient. In this study, we provided several results to validate our prediction. Cross-validation results showed that the predicted radiosensitive patients who received radiotherapy had significantly better survival than predicted radiosensitive patients who did not receive radiotherapy. After adjusting for other clinical factors, including age, sex, target therapy, histologic diagnosis, tumor stage, the benefit of radiotherapy on predicted radiosensitive patient remained significant. In addition, predicted radiosensitive patients who received radiotherapy had a significantly reduced rate of disease progression. Taken together, we have obtained a set of genes, to identify radiosensitive patients with gastric cancer. These genes may be potential biomarkers for diagnosis and treatment of gastric cancer, which could give new insight for revealing the underlying mechanism of radiosensitivity of gastric cancer.

MeSH terms

  • Algorithms
  • Biomarkers, Tumor / genetics*
  • Computational Biology / methods*
  • Databases, Genetic
  • Female
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Neoplastic / radiation effects
  • Gene Regulatory Networks* / radiation effects
  • Humans
  • Male
  • Neoplasm Staging
  • Stomach Neoplasms / genetics
  • Stomach Neoplasms / pathology
  • Stomach Neoplasms / radiotherapy*
  • Survival Analysis
  • Treatment Outcome

Substances

  • Biomarkers, Tumor