A novel missense variant in the GLI3 zinc finger domain in a family with digital anomalies

Am J Med Genet A. 2017 Dec;173(12):3221-3225. doi: 10.1002/ajmg.a.38415. Epub 2017 Sep 8.

Abstract

Mutations in GLI3, which encodes a transcription factor of the Hedgehog signaling pathway, cause several developmental anomalies linked to inappropriate tissue patterning. Here, we report a novel missense variant in the fifth zinc finger domain of GLI3 (c.1826G>A; p.(Cys609Tyr)) initially identified in a proband with preaxial polydactyly type IV, developmental delay, sensorineural hearing loss, skeletal, and genitourinary anomalies. Additional family members exhibited various digital anomalies such as preaxial polydactyly, syndactyly, and postaxial polydactyly either in isolation or combined. Functional studies of Cys609Tyr GLI3 in cultured cells showed abnormal GLI3 processing leading to decreased GLI3 repressor production, increased basal transcriptional activity, and submaximal GLI reporter activity with Hedgehog pathway activation, thus demonstrating an intriguing molecular mechanism for this GLI3-related phenotype. Given the complexity of GLI3 post-translational processing and opposing biological functions as a transcriptional activator and repressor, our findings highlight the importance of performing functional studies of presumed GLI3 variants. This family also demonstrates how GLI3 variants are variably expressed.

Keywords: GLI3; greig cephalopolysyndactyly; pallister-hall; polydactyly; zinc finger domain.

MeSH terms

  • Acrocephalosyndactylia / diagnosis
  • Acrocephalosyndactylia / genetics*
  • Amino Acid Sequence
  • Animals
  • Child, Preschool
  • Female
  • Fibroblasts
  • Fingers / abnormalities*
  • Genes, Reporter
  • Genotyping Techniques
  • Humans
  • Mice
  • Mutation, Missense
  • Nerve Tissue Proteins / genetics*
  • Pedigree
  • Phenotype
  • Polydactyly / diagnosis
  • Polydactyly / genetics*
  • Repressor Proteins / genetics
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Signal Transduction
  • Thumb / abnormalities*
  • Toes / abnormalities*
  • Zinc Finger Protein Gli3 / genetics*
  • Zinc Fingers

Substances

  • GLI3 protein, human
  • Nerve Tissue Proteins
  • Repressor Proteins
  • Zinc Finger Protein Gli3

Supplementary concepts

  • Greig cephalopolysyndactyly syndrome
  • Polydactyly preaxial type 1
  • Polydactyly, Postaxial