The maximum depth of sediment biomixing is directly related to the vertical extent of post-depositional environmental alteration in the sediment; consequently, it is important to determine the maximum burrowing depth. This study examined the maximum depth of bioturbation in a natural marine environment in Funakoshi Bay, northeastern Japan, using observations of bioturbation structures developed in an event layer (tsunami deposits of the 2011 Tohoku-Oki earthquake) and measurements of the radioactive cesium concentrations in this layer. The observations revealed that the depth of bioturbation (i.e., the thickness of the biomixing layer) ranged between 11 and 22 cm, and varied among the sampling sites. In contrast, the radioactive cesium concentrations showed that the processing of radioactive cesium in coastal environments may include other pathways in addition to bioturbation. The data also revealed the nature of the bioturbation by the heart urchin Echinocardium cordatum (Echinoidea: Loveniidae), which is one of the important ecosystem engineers in seafloor environments. The maximum burrowing depth of E. cordatum in Funakoshi Bay was 22 cm from the seafloor surface.