RareCyte® CTC Analysis Step 3: Using the CytePicker® Module for Individual Cell Retrieval and Subsequent Whole Genome Amplification of Circulating Tumor Cells for Genomic Analysis

Methods Mol Biol. 2017:1634:181-192. doi: 10.1007/978-1-4939-7144-2_15.

Abstract

The CytePicker module built into the RareCyte CyteFinder instrument allows researchers to easily retrieve individual cells from microscope slides for genomic analyses, including array CGH, targeted sequencing, and next-generation sequencing. Here, we describe the semiautomated retrieval of CTCs from the blood processed by AccuCyte (see Chapter 13) and amplification of genomic DNA so that molecular analysis can be performed.

Keywords: Cell heterogeneity; Cell picking; Circulating tumor cells; Single-cell analysis; Single-cell retrieval; Whole genome amplification.

MeSH terms

  • Automation, Laboratory / instrumentation
  • Cell Count
  • Cell Line, Tumor
  • Cell Separation / instrumentation
  • Cell Separation / methods*
  • Cells, Immobilized / immunology
  • Cells, Immobilized / metabolism
  • Cells, Immobilized / pathology*
  • Centrifugation / instrumentation
  • Centrifugation / methods
  • Comparative Genomic Hybridization
  • Equipment Design
  • Genome, Human
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Neoplasms / blood
  • Neoplasms / diagnosis*
  • Neoplasms / immunology
  • Neoplasms / pathology
  • Neoplastic Cells, Circulating / immunology
  • Neoplastic Cells, Circulating / metabolism
  • Neoplastic Cells, Circulating / pathology*
  • Nucleic Acid Amplification Techniques / methods*
  • Single-Cell Analysis / instrumentation
  • Single-Cell Analysis / methods*