Passive ocean observing sensors are unable to detect subsurface structure in ocean properties, resulting in errors in water column integrated phytoplankton biomass and net primary production (NPP) estimates. Active lidar (light detection and ranging) sensors make quantitative measurements of depth-resolved backscatter (bbp) and diffuse light attenuation (Kd) coefficients in the ocean and can provide critical measurements for biogeochemical models. Sub-surface phytoplankton biomass, light, chlorophyll, and NPP fields were characterized using both in situ measurements and coincident airborne high spectral resolution lidar (HSRL-1) measurements collected as part of the SABOR (Ship-Aircraft Bio-Optical Research) field campaign. We found that depth-resolved data are critical for calculating phytoplankton stocks and NPP, with improvements in NPP estimates up to 54%. We observed strong correlations between coincident HSRL-1 and in situ IOP measurements of both bbp (r = 0.94) and Kd (r = 0.90).