Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants

Guylaine Miotello; Amir Ktari; Abdellatif Gueddou; Imen Nouioui; Faten Ghodhbane-Gtari; Jean Armengaud; Maher Gtari

doi:10.1016/j.dib.2017.07.009

Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants

Data Brief. 2017 Jul 11:14:73-76. doi: 10.1016/j.dib.2017.07.009. eCollection 2017 Oct.

Authors

Guylaine Miotello¹, Amir Ktari², Abdellatif Gueddou², Imen Nouioui², Faten Ghodhbane-Gtari², Jean Armengaud¹, Maher Gtari²

Affiliations

¹ CEA, DRF/JOLIOT/DMTS/SPI/Li2D, Lab Innovative Technologies for Detection and Diagnostic, Bagnols-sur-Cèze, France.
² Laboratoire Microorganismes et Biomolécules Actives, Université de Tunis El Manar (FST) & Université de Carthage (INSAT), 2092 Tunis, Tunisia.

Abstract

Frankia coriariae BMG5.1 cells were incubated with root exudates derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa) and non-actinorhizal (Cucumis melo) host plants. Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high resolution tandem mass spectrometer incorporating an ultra-high-field orbitrap analyzer. MS/MS spectra were assigned with two protein sequence databases derived from the closely-related genomes from strains BMG5.1 andDg1, the Frankia symbiont of Datisca glomerata. The tandem mass spectrometry data accompanying the manuscript describing the database searches and comparative analysis (Ktari et al., 2017, doi.org/10.3389/fmicb.2017.00720) [1] have been deposited to the ProteomeXchange with identifiers PXD005979 (whole cell proteomes) and PXD005980 (exoproteome data).

Keywords: Bacteria; Host plants; Interactions; Proteogenomics; Tandem mass spectrometry.