Molecular phylogeny and timing of diversification in South American Cynolebiini seasonal killifishes

Mol Phylogenet Evol. 2017 Nov:116:61-68. doi: 10.1016/j.ympev.2017.07.020. Epub 2017 Jul 25.

Abstract

The rich biological diversity of South America has motivated a series of studies associating evolution of endemic taxa with the dramatic geologic and climatic changes that occurred during the Cainozoic. The organism here studied is the killifish tribe Cynolebiini, a group of seasonal fishes uniquely inhabiting temporary pools formed during the rainy seasons. The Cynolebiini are found in open vegetation areas inserted in the main tropical and subtropical South American phytogeographical regions east of the Andes. Here, we present the first molecular phylogeny sampling all the eight genera of the Cynolebiini, using fragments of two mitochondrial and four nuclear genes for 35 species of Cynolebiini plus 19 species as outgroups. The dataset, 4448bp, was analysed under Bayesian and maximum likelihood approaches, providing a relatively well solved tree, which retrieves high support values for the Cynolebiini and most included clades. The resulting tree was used to estimate the time of divergence in included lineages using two cyprinodontiform fossils to calibrate the tree. We further investigated historical biogeography through the likelihood-based DEC model. Our estimates indicate that divergence between the clades comprising New World and Old World aplocheiloids occurred during the Eocene, about 50Mya, much more recent than the Gondwanan fragmentation scenario assumed in previous studies. This estimation is nearly synchronous to estimated splits involving other South American and African vertebrate clades, which have been explained by transoceanic dispersal through an ancient Atlantic island chain during the Palaeogene. We estimate that Cynolebiini split from its sister group Cynopoecilini in the Oligocene, about 25Mya and that Cynolebiini started to diversify giving origin to the present genera during the Miocene, about 20-14Mya. The Cynolebiini had an ancestral origin in the Atlantic Forest and probably were not present in the open vegetation formations of central and northeastern South America until the Middle Miocene, when expansion of dry open vegetation was favoured by cool temperatures and strike seasonality. Initial splitting between the genera Cynolebias and Simpsonichthys during the Miocene (about 14Mya) is attributed to the uplift of the Central Brazilian Plateau.

Keywords: Atlantic Forest; Biogeography; Caatinga; Cerrado; Palaeoclimatology; Pampas.

MeSH terms

  • Animals
  • Bayes Theorem
  • Brazil
  • DNA / chemistry
  • DNA / isolation & purification
  • DNA / metabolism
  • Electron Transport Complex IV / classification
  • Electron Transport Complex IV / genetics
  • Fossils
  • Killifishes / classification*
  • Killifishes / genetics
  • Likelihood Functions
  • Microfilament Proteins / classification
  • Microfilament Proteins / genetics
  • Neuropeptides / classification
  • Neuropeptides / genetics
  • Nuclear Proteins / classification
  • Nuclear Proteins / genetics
  • Phylogeny
  • RNA, Ribosomal, 16S / classification
  • RNA, Ribosomal, 16S / genetics
  • Rhodopsin / classification
  • Rhodopsin / genetics
  • Seasons
  • Sequence Analysis, DNA
  • South America

Substances

  • Microfilament Proteins
  • Neuropeptides
  • Nuclear Proteins
  • RNA, Ribosomal, 16S
  • ectodermal-neural cortex 1 protein
  • DNA
  • Rhodopsin
  • Electron Transport Complex IV