A computational method for selecting short peptide sequences for inorganic material binding

Proteins. 2017 Nov;85(11):2024-2035. doi: 10.1002/prot.25356. Epub 2017 Aug 8.

Abstract

Discovering or designing biofunctionalized materials with improved quality highly depends on the ability to manipulate and control the peptide-inorganic interaction. Various peptides can be used as assemblers, synthesizers, and linkers in the material syntheses. In another context, specific and selective material-binding peptides can be used as recognition blocks in mining applications. In this study, we propose a new in silico method to select short 4-mer peptides with high affinity and selectivity for a given target material. This method is illustrated with the calcite (104) surface as an example, which has been experimentally validated. A calcite binding peptide can play an important role in our understanding of biomineralization. A practical aspect of calcite is a need for it to be selectively depressed in mining sites.

Keywords: computational modeling; organic-inorganic interaction; peptides; virtual library.

MeSH terms

  • Calcium Carbonate
  • Computational Biology / methods*
  • Inorganic Chemicals / chemistry*
  • Inorganic Chemicals / metabolism*
  • Mining
  • Molecular Dynamics Simulation
  • Peptides / chemistry*
  • Peptides / metabolism*
  • Protein Binding

Substances

  • Inorganic Chemicals
  • Peptides
  • Calcium Carbonate