Integrated Venomics and Venom Gland Transcriptome Analysis of Juvenile and Adult Mexican Rattlesnakes Crotalus simus, C. tzabcan, and C. culminatus Revealed miRNA-modulated Ontogenetic Shifts

J Proteome Res. 2017 Sep 1;16(9):3370-3390. doi: 10.1021/acs.jproteome.7b00414. Epub 2017 Aug 7.

Abstract

Adult rattlesnakes within genus Crotalus express one of two distinct venom phenotypes, type I (hemorrhagic) and type II (neurotoxic). In Costa Rican Central American rattlesnake, ontogenetic changes in the concentration of miRNAs modulate venom type II to type I transition. Venomics and venom gland transcriptome analyses showed that adult C. simus and C. tzabcan expressed intermediate patterns between type II and type I venoms, whereas C. culminatus had a canonical type I venom. Neonate/juvenile and adult Mexican rattlesnakes showed notable inter- and intraspecific variability in the number, type, abundance and ontogenetic shifts of the transcriptional and translational venom gland activities. These results support a role for miRNAs in the ontogenetic venom compositional changes in the three congeneric Mexican rattlesnakes. It is worth noting the finding of dual-action miRNAs, which silence the translation of neurotoxic heterodimeric PLA2 crotoxin and acidic PLA2 mRNAs while simultaneously up-regulating SVMP-targeting mRNAs. Dual transcriptional regulation potentially explains the existence of mutually exclusive crotoxin-rich (type-II) and SVMP-rich (type-I) venom phenotypic dichotomy among rattlesnakes. Our results support the hypothesis that alterations of the distribution of miRNAs, modulating the translational activity of venom gland toxin-encoding mRNAs in response to an external cue, may contribute to the mechanism generating adaptive venom variability.

Keywords: Crotalus culminatus; Crotalus simus; Crotalus tzabcan; Mexican rattlesnakes; miRNA-mediated post-transcriptional modulation; ontogenetic venom shift; snake venom proteomics; venom gland miRNA profiling; venom gland transcriptomics; venomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Age Factors
  • Animals
  • Base Sequence
  • Chromatography, Reverse-Phase / methods
  • Crotalid Venoms / biosynthesis
  • Crotalid Venoms / classification
  • Crotalid Venoms / genetics*
  • Crotalid Venoms / isolation & purification
  • Crotalus / genetics*
  • Crotalus / growth & development
  • Crotalus / metabolism
  • Gene Expression Profiling
  • Gene Expression Regulation
  • Gene Ontology
  • Genetic Variation
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Molecular Sequence Annotation
  • Protein Biosynthesis
  • Proteogenomics / instrumentation
  • Proteogenomics / methods*
  • Proteome / genetics*
  • Proteome / metabolism
  • Species Specificity
  • Transcriptome*

Substances

  • Crotalid Venoms
  • MicroRNAs
  • Proteome