Rapid cadmium SAD phasing at the standard wavelength (1 Å)

Acta Crystallogr D Struct Biol. 2017 Jul 1;73(Pt 7):581-590. doi: 10.1107/S2059798317006970. Epub 2017 Jun 30.

Abstract

Cadmium ions can be effectively used to promote crystal growth and for experimental phasing. Here, the use of cadmium ions as a suitable anomalous scatterer at the standard wavelength of 1 Å is demonstrated. The structures of three different proteins were determined using cadmium single-wavelength anomalous dispersion (SAD) phasing. Owing to the strong anomalous signal, the structure of lysozyme could be automatically phased and built using a very low anomalous multiplicity (1.1) and low-completeness (77%) data set. Additionally, it is shown that cadmium ions can easily substitute divalent ions in ATP-divalent cation complexes. This property could be generally applied for phasing experiments of a wide range of nucleotide-binding proteins. Improvements in crystal growth and quality, good anomalous signal at standard wavelengths (i.e. no need to change photon energy) and rapid phasing and refinement using a single data set are benefits that should allow cadmium ions to be widely used for experimental phasing.

Keywords: X-ray crystallography; divalent cations; experimental phasing; high-throughput crystallography; nucleotide-binding proteins.

MeSH terms

  • Actins / chemistry
  • Actins / metabolism
  • Animals
  • Binding Sites
  • Cadmium / chemistry*
  • Cadmium / metabolism
  • Chickens
  • Crystallization / methods
  • Crystallography, X-Ray / methods*
  • Gelsolin / chemistry
  • Gelsolin / metabolism
  • Models, Molecular
  • Muramidase / chemistry
  • Muramidase / metabolism
  • Plasmodium falciparum / chemistry
  • Plasmodium falciparum / metabolism
  • Protein Conformation
  • Proteins / chemistry*
  • Proteins / metabolism
  • Protozoan Proteins / chemistry
  • Protozoan Proteins / metabolism

Substances

  • Actins
  • Gelsolin
  • Proteins
  • Protozoan Proteins
  • Cadmium
  • Muramidase