Transcriptomic profiling of hemp bast fibres at different developmental stages

Sci Rep. 2017 Jul 10;7(1):4961. doi: 10.1038/s41598-017-05200-8.

Abstract

Bast fibres are long extraxylary cells which mechanically support the phloem and they are divided into xylan- and gelatinous-type, depending on the composition of their secondary cell walls. The former, typical of jute/kenaf bast fibres, are characterized by the presence of xylan and a high degree of lignification, while the latter, found in tension wood, as well as flax, ramie and hemp bast fibres, have a high abundance of crystalline cellulose. During their differentiation, bast fibres undergo specific developmental stages: the cells initially elongate rapidly by intrusive growth, subsequently they cease elongation and start to thicken. The goal of the present study is to provide a transcriptomic close-up of the key events accompanying bast fibre development in textile hemp (Cannabis sativa L.), a fibre crop of great importance. Bast fibres have been sampled from different stem regions. The developmental stages corresponding to active elongation and cell wall thickening have been studied using RNA-Seq. The results show that the fibres sampled at each stem region are characterized by a specific transcriptomic signature and that the major changes in cell wall-related processes take place at the internode containing the snap point. The data generated also identify several interesting candidates for future functional analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cannabis / chemistry
  • Cannabis / genetics
  • Cannabis / growth & development*
  • Cell Wall / chemistry
  • Gene Expression Profiling / methods*
  • Gene Expression Regulation, Developmental
  • Gene Expression Regulation, Plant
  • Plant Proteins / genetics*
  • Plant Stems / chemistry
  • Plant Stems / genetics
  • Plant Stems / growth & development
  • Sequence Analysis, RNA / methods
  • Xylans / genetics

Substances

  • Plant Proteins
  • Xylans