Simultaneous detection of multiple pathogens by multiplex PCR coupled with DNA biochip hybridization

Lab Anim. 2018 Apr;52(2):186-195. doi: 10.1177/0023677217718864. Epub 2017 Jul 10.

Abstract

Traditional serological enzyme-linked immunosorbent assay (ELISA) is routinely used to monitor pathogens during quarantine in most animal facilities to prevent possible infection. However, the ELISA platform is a single-target assay, and screening all targeted pathogens is time-consuming and laborious. In this study, to increase sensitivity and to reduce diagnosis time for high-throughput processes, multiplex PCR and DNA biochip techniques were combined to develop a multi-pathogen diagnostic method for use instead of routine ELISA. Eight primer sets were designed for multiplex PCR to detect genes from seven targeted bacterial and viral pathogens. DNA-DNA hybridization was conducted on a biochip following the multiple PCR analysis. Using this method, a total of 24 clinical samples were tested, and the result showed that not only single infection but also co-infection by multi-pathogens can be detected. In conclusion, multiplex PCR coupled with a DNA biochip is an efficient method for detecting multi-pathogens in a reaction. This platform is a useful tool for quarantine services and disease prevention in animal facilities.

Keywords: DNA biochip; ELISA; multiplex PCR; pathogen.

MeSH terms

  • Alkaline Phosphatase / chemistry
  • Animals
  • Animals, Laboratory*
  • Bacteria / isolation & purification*
  • Bacterial Infections / diagnosis*
  • Bacterial Infections / microbiology
  • Biotinylation
  • Conjugation, Genetic
  • DNA Probes
  • Luminescent Measurements
  • Multiplex Polymerase Chain Reaction / methods*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Rodent Diseases / diagnosis*
  • Rodent Diseases / microbiology
  • Sensitivity and Specificity
  • Streptavidin / chemistry

Substances

  • DNA Probes
  • Streptavidin
  • Alkaline Phosphatase