The structure of Plasmodium falciparum 3D7_0606800 reveals a bi-lobed architecture that supports re-annotation as a Venus Flytrap protein

Protein Sci. 2017 Sep;26(9):1878-1885. doi: 10.1002/pro.3218. Epub 2017 Jul 26.

Abstract

Plasmodium falciparum, the causative agent of malaria, employs a diverse array of surface displayed proteins to promote dissemination and establish infection in the human host. Of these, Pf3D7_0606800 is highly immunogenic and has been designated a potential top 10 candidate for inclusion in a multicomponent malarial vaccine. The role of Pf3D7_0606800 in parasite biology, however, is unknown and its characterization has been complicated by a lack of sequence identity with proteins of known structure or function. Towards elucidating Pf3D7_0606800 function, we determined its structure to a resolution of 2.35 Å using selenium single wavelength anomalous dispersion. A bi-lobed architecture displays the core structural hallmarks of Venus Flytrap (VFT) proteins prompting us to re-annotate Pf3D7_0606800 as PfVFT1. Structural analysis further revealed an extended inter-lobe groove that, when interrogated by molecular docking, appears well suited to bind peptide-based ligands. Collectively, our structural characterization of the highly antigenic P. falciparum surface protein PfVFT1 provides intriguing functional insight and establishes a structural template that could prove valuable for malaria vaccine engineering studies.

Keywords: Plasmodium falciparum; X-ray crystallography; bi-lobed architecture; conformational flexibility; venus flytrap domain.

MeSH terms

  • Crystallography, X-Ray
  • Droseraceae / chemistry
  • Molecular Docking Simulation
  • Plant Proteins / chemistry
  • Plasmodium falciparum / chemistry*
  • Plasmodium falciparum / genetics
  • Protein Conformation
  • Protozoan Proteins / chemistry*

Substances

  • Plant Proteins
  • Protozoan Proteins

Associated data

  • PDB/3HV1
  • PDB/1PSZ
  • PDB/2CHU
  • PDB/1USK
  • PDB/1Z16
  • PDB/4MBP
  • PDB/2ZVK
  • PDB/1IXH
  • PDB/2Z22
  • PDB/2VPO
  • PDB/3FXB
  • PDB/2I48
  • PDB/2G29
  • PDB/5JKQ
  • PDB/2V25
  • PDB/5HMT
  • PDB/3KBR
  • PDB/2VHA
  • PDB/3K4U