Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis

Methods Mol Biol. 2017:1607:377-399. doi: 10.1007/978-1-4939-7000-1_16.

Abstract

The normal elastic X-ray scattering that depends only on electron density can be modulated by an "anomalous" component due to resonance between X-rays and electronic orbitals. Anomalous scattering thereby precisely identifies atomic species, since orbitals distinguish atomic elements, which enables the multi- and single-wavelength anomalous diffraction (MAD and SAD) methods. SAD now predominates in de novo structure determination of biological macromolecules, and we focus here on the prevailing SAD method. We describe the anomalous phasing theory and the periodic table of phasing elements that are available for SAD experiments, differentiating between those readily accessible for at-resonance experiments and those that can be effective away from an edge. We describe procedures for present-day SAD phasing experiments and we discuss optimization of anomalous signals for challenging applications. We also describe methods for using anomalous signals as molecular markers for tracing and element identification. Emerging developments and perspectives are discussed in brief.

Keywords: Anomalous scattering; Crystal structure; De novo structure determination; Multiple crystals; Native SAD; Phasing problem.

Publication types

  • Review
  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Crystallization
  • Electrons*
  • Metals, Heavy / chemistry*
  • Models, Molecular
  • Models, Statistical*
  • Protein Conformation
  • Proteins / chemistry
  • Proteins / ultrastructure*
  • Sulfur / chemistry*
  • Synchrotrons
  • X-Ray Diffraction / methods*
  • X-Rays

Substances

  • Metals, Heavy
  • Proteins
  • Sulfur