Contribution of Type II Topoisomerase Mutations to Fluoroquinolone Resistance in Enterococcus faecium from Japanese Clinical Setting

Microb Drug Resist. 2018 Jan/Feb;24(1):1-7. doi: 10.1089/mdr.2016.0328. Epub 2017 May 15.

Abstract

High-level fluoroquinolone resistance is conferred by the mutation of conserved serine and acidic amino acids in the quinolone resistance-determining region (QRDR) of the A subunits of the type II topoisomerases, DNA gyrase (GyrA) and topoisomerase IV (ParC). In Japan, fluoroquinolone-resistant Enterococcus faecium continues to emerge in clinical settings. We analyzed 131 Japanese E. faecium clinical isolates for susceptibility to levofloxacin (LVFX), and QRDR mutational status. The bacterial collection had a high percentage of resistance (79%) and showed elevated drug minimal inhibitory concentrations (MICs). Eighty-three isolates had single or combined mutations in gyrA and/or parC; all were resistant to LVFX. A strong correlation was evident between log-transformed MICs and the total number of QRDR mutations (r = 0.7899), confirming the involvement of QRDR mutations in drug resistance, as previously described. Three-dimensional modeling indicated that the amino acid change(s) in QRDR could disrupt the interaction between the enzymes and drugs: the most common cause of quinolone resistance. Interestingly, eight isolates had a single mutation on gyrA and exhibited significantly reduced susceptibility. These data imply that either DNA gyrase or topoisomerase IV can be the primary target of fluoroquinolones, although topoisomerase IV is commonly thought to be the primary target in gram-positive bacteria.

Keywords: enterococci; gyrA; levofloxacin; parC; quinolone binding; quinolone resistance; type II topoisomerase.

MeSH terms

  • Amino Acid Sequence
  • Anti-Bacterial Agents / chemistry*
  • Anti-Bacterial Agents / metabolism
  • Anti-Bacterial Agents / pharmacology
  • Binding Sites
  • DNA Gyrase / chemistry
  • DNA Gyrase / genetics*
  • DNA Gyrase / metabolism
  • DNA Topoisomerase IV / chemistry
  • DNA Topoisomerase IV / genetics*
  • DNA Topoisomerase IV / metabolism
  • Drug Resistance, Bacterial / genetics*
  • Enterococcus faecium / drug effects
  • Enterococcus faecium / enzymology
  • Enterococcus faecium / genetics*
  • Enterococcus faecium / isolation & purification
  • Fluoroquinolones / pharmacology
  • Gene Expression
  • Gram-Positive Bacterial Infections / microbiology
  • Gram-Positive Bacterial Infections / pathology
  • Humans
  • Japan
  • Levofloxacin
  • Microbial Sensitivity Tests
  • Mutation*
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Sequence Alignment
  • Structural Homology, Protein

Substances

  • Anti-Bacterial Agents
  • Fluoroquinolones
  • Levofloxacin
  • DNA Topoisomerase IV
  • DNA Gyrase