Joint Covariate Detection on Expression Profiles for Selecting Prognostic miRNAs in Glioblastoma

Biomed Res Int. 2017:2017:3017948. doi: 10.1155/2017/3017948. Epub 2017 Mar 20.

Abstract

An important application of expression profiles is to stratify patients into high-risk and low-risk groups using limited but key covariates associated with survival outcomes. Prior to that, variables considered to be associated with survival outcomes are selected. A combination of single variables, each of which is significantly related to survival outcomes, is always regarded to be candidates for posterior patient stratification. Instead of individually significant variables, a combination that contains not only significant but also insignificant variables is supposed to be concentrated on. By means of bottom-up enumeration on each pair of variables, we propose a joint covariate detection strategy to select candidates that not only correspond to close association with survival outcomes but also help to make a clear stratification of patients. Experimental results on a publicly available dataset of glioblastoma multiforme indicate that the selected pair composed of an individually significant and an insignificant miRNA keeps a better performance than the combination of significant single variables. The selected miRNA pair is ultimately regarded to be associated with the prognosis of glioblastoma multiforme by further pathway analysis.

MeSH terms

  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Neoplastic
  • Glioblastoma / epidemiology*
  • Glioblastoma / genetics*
  • Glioblastoma / pathology
  • Humans
  • Kaplan-Meier Estimate
  • MicroRNAs / biosynthesis*
  • MicroRNAs / genetics
  • Models, Theoretical
  • Prognosis*
  • Risk Assessment

Substances

  • MicroRNAs