IFN-λ3, not IFN-λ4, likely mediates IFNL3-IFNL4 haplotype-dependent hepatic inflammation and fibrosis

Nat Genet. 2017 May;49(5):795-800. doi: 10.1038/ng.3836. Epub 2017 Apr 10.

Abstract

Genetic variation in the IFNL3-IFNL4 (interferon-λ3-interferon-λ4) region is associated with hepatic inflammation and fibrosis. Whether IFN-λ3 or IFN-λ4 protein drives this association is not known. We demonstrate that hepatic inflammation, fibrosis stage, fibrosis progression rate, hepatic infiltration of immune cells, IFN-λ3 expression, and serum sCD163 levels (a marker of activated macrophages) are greater in individuals with the IFNL3-IFNL4 risk haplotype that does not produce IFN-λ4, but produces IFN-λ3. No difference in these features was observed according to genotype at rs117648444, which encodes a substitution at position 70 of the IFN-λ4 protein and reduces IFN-λ4 activity, or between patients encoding functionally defective IFN-λ4 (IFN-λ4-Ser70) and those encoding fully active IFN-λ4-Pro70. The two proposed functional variants (rs368234815 and rs4803217) were not superior to the discovery SNP rs12979860 with respect to liver inflammation or fibrosis phenotype. IFN-λ3 rather than IFN-λ4 likely mediates IFNL3-IFNL4 haplotype-dependent hepatic inflammation and fibrosis.

MeSH terms

  • Fibrosis / genetics
  • Fibrosis / metabolism
  • Gene Frequency
  • Genotype
  • Haplotypes*
  • Hepacivirus / physiology
  • Hepatitis C / genetics
  • Hepatitis C / virology
  • Humans
  • Inflammation / genetics*
  • Inflammation / metabolism
  • Interferons
  • Interleukins / genetics*
  • Interleukins / metabolism
  • Linkage Disequilibrium
  • Liver / metabolism*
  • Liver / pathology
  • Logistic Models
  • Multivariate Analysis
  • Polymorphism, Single Nucleotide
  • Reverse Transcriptase Polymerase Chain Reaction

Substances

  • interferon-lambda, human
  • IFNL4 protein, human
  • Interleukins
  • Interferons