A systematic optimization of medium chain fatty acid biosynthesis via the reverse beta-oxidation cycle in Escherichia coli

Metab Eng. 2017 May:41:115-124. doi: 10.1016/j.ymben.2017.03.012. Epub 2017 Apr 7.

Abstract

Medium-chain fatty acids (MCFAs, 6-10 carbons) are valuable precursors to many industrial biofuels and chemicals, recently engineered reversal of the β-oxidation (r-BOX) cycle has been proposed as a potential platform for efficient synthesis of MCFAs. Previous studies have made many exciting achievements on functionally characterizing four core enzymes of this r-BOX cycle. However, the information about bottleneck nodes in this cycle is elusive. Here, a quantitative assessment of the inherent limitations of this cycle was conducted to capitalize on its potential. The selection of the core β-oxidation reversal enzymes in conjunction with acetyl-CoA synthetase endowed the ability to synthesize about 1g/L MCFAs. Furthermore, a gene dosage experiment was developed to identify two rate-limiting enzymes (acetyl-CoA synthetase and thiolase). The de novo pathway was then separated into two modules at thiolase and MCFA production titer increased to 2.8g/L after evaluating different construct environments. Additionally, the metabolism of host organism was reprogrammed to the desired biochemical product by the clustered regularly interspaced short palindromic repeats interference system, resulted in a final MCFA production of 3.8g/L. These findings described here identified the inherent limitations of r-BOX cycle and further unleashed the lipogenic potential of this cycle, thus paving the way for the development of a bacterial platform for microbial production of high-value oleo-chemicals from low-value carbons in a sustainable and environmentally friendly manner.

Keywords: Biochemical; Biofuels; Metabolic engineering; Synthetic biology; β-oxidation reversal.

MeSH terms

  • Acetate-CoA Ligase* / biosynthesis
  • Acetate-CoA Ligase* / genetics
  • Escherichia coli Proteins* / biosynthesis
  • Escherichia coli Proteins* / genetics
  • Escherichia coli* / genetics
  • Escherichia coli* / metabolism
  • Fatty Acids* / biosynthesis
  • Fatty Acids* / genetics
  • Metabolic Engineering*
  • Oxidation-Reduction

Substances

  • Escherichia coli Proteins
  • Fatty Acids
  • Acetate-CoA Ligase