We show that Mediterranean oaks that emit isoprene, monoterpenes or no isoprenoids belong to different subgenera as indicated by morpho-taxonomy and molecular genetics. On the other hand, oaks from North America and Asia that are taxonomically similar to the Mediterranean monoterpene emitter Q. ilex emit isoprene only. We surmise that isoprene emission is a genetic character which evolved ancestrally in the oak genus since this is the prevalent emission type in oaks widespread around the world and adapted to different environments. This ancestral character may have been either lost or modified in more recent clades such as those originating the Mediterranean oaks. If our hypothesis is correct then the taxonomy of European oaks is validated by this independent trait. Isoprenoid emission could serve as a chemo-taxonomical marker and could be used to reconstruct the phylogeny of oaks in association with molecular markers.
Keywords: Evolution; Isoprenoid emission; Key words Chemo-taxonomy; Quercus.