In situ and in silico kinetic analyses of programmed cell death-1 (PD-1) receptor, programmed cell death ligands, and B7-1 protein interaction network

J Biol Chem. 2017 Apr 21;292(16):6799-6809. doi: 10.1074/jbc.M116.763888. Epub 2017 Mar 6.

Abstract

Programmed cell death-1 (PD-1) is an inhibitory receptor with an essential role in maintaining peripheral tolerance and is among the most promising immunotherapeutic targets for treating cancer, autoimmunity, and infectious diseases. A complete understanding of the consequences of PD-1 engagement by its ligands, PD-L1 and PD-L2, and of PD-L1 binding to B7-1 requires quantitative analysis of their interactions at the cell surface. We present here the first complete in situ kinetic analysis of the PD-1/PD-ligands/B7-1 system. Consistent with previous solution measurements, we observed higher in situ affinities for human (h) than murine (m) PD-1 interactions, stronger binding of hPD-1 to hPD-L2 than hPD-L1, and comparable binding of mPD-1 to both ligands. However, in contrast to the relatively weak solution affinities, the in situ affinities of PD-1 are as high as those of the T cell receptor for agonist pMHC and of LFA-1 (lymphocyte function-associated antigen 1) for ICAM-1 (intercellular adhesion molecule 1) but significantly lower than that of the B7-1/CTLA-4 interaction, suggesting a distinct basis for PD-1- versus CTLA-4-mediated inhibition. Notably, the in situ interactions of PD-1 are much stronger than that of B7-1 with PD-L1. Overall, the in situ affinity ranking greatly depends on the on-rate instead of the off-rate. In silico simulations predict that PD-1/PD-L1 interactions dominate at interfaces between activated T cells and mature dendritic cells and that these interactions will be highly sensitive to the dynamics of PD-L1 and PD-L2 expression. Our results provide a kinetic framework for better understanding inhibitory PD-1 activity in health and disease.

Keywords: T-cell; cell surface protein; kinetics; mathematical modeling; protein-protein interaction.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • B7-1 Antigen / metabolism*
  • CHO Cells
  • Cell Membrane / metabolism
  • Cell Separation
  • Cricetinae
  • Cricetulus
  • Erythrocytes / cytology
  • Flow Cytometry
  • Humans
  • Intercellular Adhesion Molecule-1 / metabolism
  • Ligands
  • Lymphocyte Function-Associated Antigen-1 / metabolism
  • Mice
  • Models, Theoretical
  • Programmed Cell Death 1 Receptor / metabolism*
  • Protein Interaction Mapping
  • Receptors, Antigen, T-Cell / metabolism
  • T-Lymphocytes / metabolism

Substances

  • B7-1 Antigen
  • ICAM1 protein, human
  • Icam1 protein, mouse
  • Ligands
  • Lymphocyte Function-Associated Antigen-1
  • PDCD1 protein, human
  • Pdcd1 protein, mouse
  • Programmed Cell Death 1 Receptor
  • Receptors, Antigen, T-Cell
  • Intercellular Adhesion Molecule-1