2-Pyridinyl Thermolabile Groups as General Protectants for Hydroxyl, Phosphate, and Carboxyl Functions

Curr Protoc Nucleic Acid Chem. 2017 Mar 2:68:2.20.1-2.20.25. doi: 10.1002/cpnc.26.

Abstract

Application of 2-pyridinyl thermolabile protecting groups (2-PyTPGs) for protection of hydroxyl, phosphate, and carboxyl functions is presented in this unit. Their characteristic feature is a unique removal process following the intramolecular cyclization mechanism and induced only by temperature rise. Deprotection rate of 2-PyTPGs is dependent on certain parameters, such as solvent (aqueous or non-aqueous medium), pH values, and electron distribution in a pyridine ring. The presented approach pertains not only to protecting groups but also to an advanced system of controlling certain properties of 2-pyridinyl derivatives. We improved the "chemical switch" method, allowing us to regulate the protecting group stability by inversing the electron distribution in 2-PyTPG. Together with pH values manipulation, this allows us to regulate the protecting group stability. Moreover, phosphite cyclization to oxazaphospholidine provides a very stable but easily reversible tool for phosphate protection/modifications. For all TPGs we confirmed their utility in a system of protecting groups. This concept can contribute to designing the general protecting group that could be useful in bioorganic chemistry. © 2017 by John Wiley & Sons, Inc.

Keywords: chemical switch; intramolecular cyclisation; nucleosides; protecting groups; thermal lability; “click-clack”.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biochemistry / methods*
  • Carbonates / chemical synthesis*
  • Cyclization
  • Hydroxyl Radical
  • Nucleosides / chemistry
  • Phosphates / chemistry
  • Pyridines / chemistry*

Substances

  • Carbonates
  • Nucleosides
  • Phosphates
  • Pyridines
  • Hydroxyl Radical
  • pyridine