Xist-dependent imprinted X inactivation and the early developmental consequences of its failure

Nat Struct Mol Biol. 2017 Mar;24(3):226-233. doi: 10.1038/nsmb.3365. Epub 2017 Jan 30.

Abstract

The long noncoding RNA Xist is expressed from only the paternal X chromosome in mouse preimplantation female embryos and mediates transcriptional silencing of that chromosome. In females, absence of Xist leads to postimplantation lethality. Here, through single-cell RNA sequencing of early preimplantation mouse embryos, we found that the initiation of imprinted X-chromosome inactivation absolutely requires Xist. Lack of paternal Xist leads to genome-wide transcriptional misregulation in the early blastocyst and to failure to activate the extraembryonic pathway that is essential for postimplantation development. We also demonstrate that the expression dynamics of X-linked genes depends on the strain and parent of origin as well as on the location along the X chromosome, particularly at the first 'entry' sites of Xist. This study demonstrates that dosage-compensation failure has an effect as early as the blastocyst stage and reveals genetic and epigenetic contributions to orchestrating transcriptional silencing of the X chromosome during early embryogenesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Animals
  • Blastocyst / cytology
  • Blastocyst / metabolism
  • Cell Differentiation / genetics
  • Dosage Compensation, Genetic
  • Embryo Implantation / genetics
  • Embryo, Mammalian / metabolism
  • Embryonic Development / genetics*
  • Female
  • Gene Expression Regulation, Developmental
  • Gene Knockout Techniques
  • Gene Silencing
  • Genes, X-Linked
  • Genomic Imprinting*
  • Kinetics
  • Male
  • Mice, Inbred C57BL
  • Mutation / genetics
  • RNA, Long Noncoding / genetics*
  • RNA, Long Noncoding / metabolism
  • Sequence Analysis, RNA
  • Single-Cell Analysis
  • Time Factors
  • X Chromosome / genetics
  • X Chromosome Inactivation / genetics*

Substances

  • RNA, Long Noncoding
  • XIST non-coding RNA