Rapid Estimation of Catalytic Efficiency by Cumulative Atomic Multipole Moments: Application to Ketosteroid Isomerase Mutants

J Chem Theory Comput. 2017 Feb 14;13(2):945-955. doi: 10.1021/acs.jctc.6b01131. Epub 2017 Feb 2.

Abstract

We propose a simple atomic multipole electrostatic model to rapidly evaluate the effects of mutation on enzyme activity and test its performance on wild-type and mutant ketosteroid isomerase. The predictions of our atomic multipole model are similar to those obtained with symmetry-adapted perturbation theory at a fraction of the computational cost. We further show that this approach is relatively insensitive to the precise amino acid side chain conformation in mutants and may thus be useful in computational enzyme (re)design.

MeSH terms

  • Androstenedione / chemistry
  • Androstenedione / metabolism
  • Biocatalysis*
  • Catalytic Domain
  • Isomerism
  • Molecular Dynamics Simulation*
  • Mutant Proteins / chemistry*
  • Mutant Proteins / genetics
  • Mutant Proteins / metabolism*
  • Mutation*
  • Static Electricity
  • Steroid Isomerases / chemistry*
  • Steroid Isomerases / genetics
  • Steroid Isomerases / metabolism*
  • Thermodynamics

Substances

  • Mutant Proteins
  • Androstenedione
  • Steroid Isomerases