Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa)

PLoS One. 2017 Jan 17;12(1):e0170210. doi: 10.1371/journal.pone.0170210. eCollection 2017.

Abstract

The DNA-binding One Zinc Finger (Dof) genes are ubiquitous in many plant species and are especial transcription regulators that participate in plant growth, development and various procedures, including biotic and abiotic stress reactions. In this study, we identified 41 PtrDof members from Populus trichocarpa genomes and classified them into four groups. The conserved motifs and gene structures of some PtrDof genes belonging to the same subgroup were almost the same. The 41 PtrDof genes were dispersed on 18 of the 19 Populus chromosomes. Many key stress- or phytohormone-related cis-elements were discovered in the PtrDof gene promoter regions. Consequently, we undertook expression profiling of the PtrDof genes in leaves and roots in response to osmotic stress and abscisic acid. A total of seven genes (PtrDof14, 16, 25, 27, 28, 37 and 39) in the Populus Dof gene family were consistently upregulated at point in all time in the leaves and roots under osmotic and abscisic acid (ABA) stress. We observed that 12 PtrDof genes could be targeted by 15 miRNAs. Moreover, we mapped the cleavage site in PtrDof30 using the 5'RLM-RACE. The results showed that PtrDofs may have a role in resistance to abiotic stress in Populus trichocarpa.

MeSH terms

  • Gene Expression Profiling
  • Gene Expression Regulation, Plant*
  • Gene Ontology
  • Osmotic Pressure*
  • Phylogeny
  • Plant Leaves / genetics
  • Plant Leaves / growth & development
  • Plant Leaves / metabolism
  • Plant Proteins / genetics
  • Plant Proteins / metabolism*
  • Plant Roots / genetics
  • Plant Roots / growth & development
  • Plant Roots / metabolism
  • Populus / genetics
  • Populus / growth & development
  • Populus / metabolism*
  • Promoter Regions, Genetic / genetics
  • Stress, Physiological*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*

Substances

  • Plant Proteins
  • Transcription Factors

Grants and funding

This work was supported by the National Natural Science Foundation of China (31400573) and the Science Fund of Heilongjiang Province (QC2015035). Yuchi Gao is employed by Annoroad Gene Technology Co., Ltd. Annoroad Gene Technology Co., Ltd provided support in the form of salary for author YG, but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.