Structural Insights into the Redox-Sensing Mechanism of MarR-Type Regulator AbfR

J Am Chem Soc. 2017 Feb 1;139(4):1598-1608. doi: 10.1021/jacs.6b11438. Epub 2017 Jan 23.

Abstract

As a master redox-sensing MarR-family transcriptional regulator, AbfR participates in oxidative stress responses and virulence regulations in Staphylococcus epidermidis. Here, we present structural insights into the DNA-binding mechanism of AbfR in different oxidation states by determining the X-ray crystal structures of a reduced-AbfR/DNA complex, an overoxidized (Cys13-SO2H and Cys13-SO3H) AbfR/DNA, and 2-disulfide cross-linked AbfR dimer. Together with biochemical analyses, our results suggest that the redox regulation of AbfR-sensing displays two novel features: (i) the reversible disulfide modification, but not the irreversible overoxidation, significantly abolishes the DNA-binding ability of the AbfR repressor; (ii) either 1-disulfide cross-linked or 2-disulfide cross-linked AbfR dimer is biologically significant. The overoxidized species of AbfR, resembling the reduced AbfR in conformation and retaining the DNA-binding ability, does not exist in biologically significant concentrations, however. The 1-disulfide cross-linked modification endows AbfR with significantly weakened capability for DNA-binding. The 2-disulfide cross-linked AbfR adopts a very "open" conformation that is incompatible with DNA-binding. Overall, the concise oxidation chemistry of the redox-active cysteine allows AbfR to sense and respond to oxidative stress correctly and efficiently.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cross-Linking Reagents / chemistry
  • Cross-Linking Reagents / metabolism
  • Crystallography, X-Ray
  • DNA / chemistry
  • DNA / metabolism*
  • Disulfides / chemistry
  • Disulfides / metabolism
  • Models, Molecular
  • Oxidation-Reduction
  • Protein Conformation
  • Staphylococcus epidermidis / metabolism*
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism*

Substances

  • Cross-Linking Reagents
  • Disulfides
  • Transcription Factors
  • DNA